PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g06040.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family S1Fa-like
Protein Properties Length: 77aa    MW: 8631.12 Da    PI: 11.2043
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g06040.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA39.71e-121042233
                          S1FA  2 avakvea.kGlnPGlivllvvgglllvflvgny 33
                                  +va++++ kGlnPG+i llvv+++ll+f+vg y
  Zjn_sc00008.1.g06040.1.sm.mk 10 NVAIEDViKGLNPGMIALLVVASFLLLFFVGKY 42
                                  45566668***********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046896.1E-91642IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MTKRWGGANN VAIEDVIKGL NPGMIALLVV ASFLLLFFVG KYNRRRLLLR KRTGLKEAEE  60
GKAEAGHSRQ ESKKPHN
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4296133